1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCCCTCAAAATCATGGATGAAGAGTACGATGTTATAGTGTTGGGCACCGGTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcctttctaattcactcatttttcaacttctccttggaaataagaggttttttggccctctactggagtcatgcttgtaatcgactatttttg...
species | Vitis vinifera |
transcript | Vv05s0094g01550.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110687677|gb|EE065357.1|EE065357
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110724401|gb|EE100197.1|EE100197
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110685725|gb|EE062694.1|EE062694
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110687369|gb|EE064718.1|EE064718
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110701029|gb|EE078211.1|EE078211
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110687516|gb|EE065012.1|EE065012
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|161719051|gb|FC065697.1|FC065697
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|71873208|gb|DT022263.1|DT022263
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|161715281|gb|FC064588.1|FC064588
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCEST: gi|110690999|gb|EE068597.1|EE068597
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
EST: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAG GTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
genomic: GTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcc ... tgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCCTCAAAATCATGGATGAAGAGTACGATGTTATAGTGTTGGGCACCGGTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTAGACGGCCTCAAGgtcttcatcctttctaattcactcatttttcaacttctccttggaaataagaggttttttggccctctactggagtcatgcttgtaatcgactatttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcta