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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTGGTGGTCTCTGCAAGCAGCGCTGAAAACGGGGTCGGTTTCAATGACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattccgcgttttcatatgaagattgtgtttgggttaataatatgtgatggcatgtgtgagttatcaaatgggtttttgctaacttttgttatatt...

Basic information

species Vitis vinifera
transcript Vv05s0094g01110.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188685|gb|CF608034.1|CF608034
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|30326336|gb|CD009598.1|CD009598
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|294964421|gb|GW838224.1|GW838224
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|37185402|gb|CF604755.1|CF604755
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|32247510|gb|CD713329.1|CD713329
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|352772784|gb|FQ473822.1|FQ473822
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|161708919|gb|FC060462.1|FC060462
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATATGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|110708435|gb|EE085972.1|EE085972
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
EST: gi|110723613|gb|EE101123.1|EE101123
EST:     GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAA                         AGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT
genomic: GACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattcc ... ctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGCTGGTGGTCTCTGCAAGCAGCGCTGAAAACGGGGTCGGTTTCAATGACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAgtatgattccgcgttttcatatgaagattgtgtttgggttaataatatgtgatggcatgtgtgagttatcaaatgggtttttgctaacttttgttatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaga