1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAGAAGTTTTGAGTTCCAAGGAATGCGAGAATCTGGGGTTTTCTGGTCTCGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccctcttatctctttcactaaaaacattttctcttcattttggaatttctggaaataattttcggatatatgattagggtttattgagtttat...
species | Vitis vinifera |
transcript | Vv05s0094g00490.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|110692825|gb|EE068530.1|EE068530
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|30129296|gb|CB914635.1|CB914635
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCAEST: gi|26265467|gb|CA816530.1|CA816530
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
EST: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGATTATGTCAAAGACCAAG AGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGACTCTGATGATTCCA
genomic: CGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccc ... tcatctgcagAGTTAGTATCTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAGTTTTGAGTTCCAAGGAATGCGAGAATCTGGGGTTTTCTGGTCTCGCTCTCTGCTCCGACTGCAATACCTTGGCCGAGTATGTCAAAGACCAAGgctagtaccctcttatctctttcactaaaaacattttctcttcattttggaatttctggaaataattttcggatatatgattagggtttattgagtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa