1 5' 3' | 2 5' 3' |
ACTTGTTTCGGAGAGATTGAGGCGAAAATTGAATGAAATTAACTTAGCCGCTCAAGCCCAACTCTCTGGTGTTCAAGATCATGTCAATTTCACTCTACAGgtgtctctctatctttatatattgtttctttgattcccattttccccctctgtttggttgctgagaaatccaatgtcaagcaaaagaagtaaaagttgtt...
species | Vitis vinifera |
transcript | Vv05s0077g02200.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCAATTTCACTCTACAG CAAGCCTACTTCAAATGCGCATACGAGTGCTTCGATAGGAAAAGAAAGCAAEST: gi|110383512|gb|EC947890.1|EC947890
genomic: GTCAATTTCACTCTACAGgtgtctctct ... ctgcttgcagCAAGCATACTTCAAATGCGCATACGAGTGCTTCGATAGGAAAAGAAAGCAA
EST: CTCAAGCCCAACTCTCTGGTGTTCAAGATCATGTCAATTTCACTCTACAG CAAGCATACTTCAAATGCGCATACGAGTGCTTCGATAGGAAAAGAAAGCAA
genomic: CTCAAGCCCAACTCTCTGGTGTTCAAGATCATGTCAATTTCACTCTACAGgtgtctctct ... ctgcttgcagCAAGCATACTTCAAATGCGCATACGAGTGCTTCGATAGGAAAAGAAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGTTTCGGAGAGATTGAGGCGAAAATTGAATGAAATTAACTTAGCCGCTCAAGCCCAACTCTCTGGTGTTCAAGATCATGTCAATTTCACTCTACAGgtgtctctctatctttatatattgtttctttgattcccattttccccctctgtttggttgctgagaaatccaatgtcaagcaaaagaagtaaaagttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaag