1 5' 3' | 2 5' 3' |
ACTCCTCGTCGATCTCTTCCTCGTCGACCGAAGCAGCGAATGATGATCAGACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccctgtctttttttatttccttcctttttttttttatctttgttggtttgtcaagactattacagtaatttaggtgctttacatgaaacatgt...
species | Vitis vinifera |
transcript | Vv05s0077g00730.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTAAAGC-GCGGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACA GTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGCEST: gi|110719220|gb|EE096949.1|EE096949
genomic: CTAAAGCGGC-GGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
EST: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACA GTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGCEST: gi|22014586|gb|BQ799620.1|BQ799620
genomic: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
EST: ACTAAAGCGGC-GAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACA GTTGAAACCCAAAAAGAAG-ACCAAAAGAGGCAGAGAGAGCCGAGATTTGCEST: gi|71858820|gb|DT007875.1|DT007875
genomic: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
EST: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACA GTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGCEST: gi|22014202|gb|BQ799236.1|BQ799236
genomic: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
EST: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCACCA GTTGAACCCCAAAAAGAAGACCCAAAAGAGGCAGAGAGAGCCGAGATTTGCEST: gi|110712223|gb|EE089600.1|EE089600
genomic: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
EST: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACA GTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
genomic: ACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccc ... atgggtttagGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCTCGTCGATCTCTTCCTCGTCGACCGAAGCAGCGAATGATGATCAGACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAgtgagttccctgtctttttttatttccttcctttttttttttatctttgttggtttgtcaagactattacagtaatttaggtgctttacatgaaacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat