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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTCAACTCGAAGAAGCTCAACTGCGATTCGACGGATTGAAATCCAAGTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatgattgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g00690.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862723|gb|DT011778.1|DT011778
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71883958|gb|DT033013.1|DT033013
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71857629|gb|DT006684.1|DT006684
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|110723631|gb|EE101165.1|EE101165
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71863613|gb|DT012668.1|DT012668
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71858254|gb|DT007309.1|DT007309
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|33405936|gb|CF211563.1|CF211563
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|77581517|gb|DV219710.1|DV219710
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT