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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGGTTTCAGTCCAAGAAGGAGTATCTGTTTGGGAGGATTGACATGCAGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttcatcattctcaaacttcatcccttcaaatacgggtgataatgatttttgcatagaaccaaaacaaaaaaaggtggaagttgcttgaattaa...

Basic information

species Vitis vinifera
transcript Vv05s0062g00240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190411|gb|CF609760.1|CF609760
EST:     GCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: GCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|161712707|gb|FC062279.1|FC062279
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|161705608|gb|FC054849.1|FC054849
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71858335|gb|DT007390.1|DT007390
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71858773|gb|DT007828.1|DT007828
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|110723199|gb|EE100237.1|EE100237
EST:     AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71856339|gb|DT005394.1|DT005394
EST:     AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCATTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71854792|gb|DT003847.1|DT003847
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71857510|gb|DT006565.1|DT006565
EST:     AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71859664|gb|DT008719.1|DT008719
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71854730|gb|DT003785.1|DT003785
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71856628|gb|DT005683.1|DT005683
EST:     AGCTCAAGCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA
EST: gi|71855028|gb|DT004083.1|DT004083
EST:     AGCTCAATCTTGTCGCTGGTAACTCTGCTGGCACCGTCACTGCCTACTAC                         TTATCTTCTCAAGGGTCAACCCATGATGAGATCGACTTCGAGTTCCTGGGA
genomic: AGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttc ... tgtgatgcagTTATCTTCTCAAGGGTCAACCCATGATGAGATTGACTTCGAGTTCCTGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGGGTTTCAGTCCAAGAAGGAGTATCTGTTTGGGAGGATTGACATGCAGCTCAAGCTTGTCGCTGGCAACTCTGCTGGCACCGTCACTGCCTACTACgtatgtcttcatcattctcaaacttcatcccttcaaatacgggtgataatgatttttgcatagaaccaaaacaaaaaaaggtggaagttgcttgaattaa

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggaa