Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTCCGATCTCTACGGCATTCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctccaatctatattcccaattcaatcaatcgaattctaggttagatacaatcgtttggatgctgagaaaataatgagaaacgaaagaaaatttt...

Basic information

species Vitis vinifera
transcript Vv05s0062g00210.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400937|gb|EC967524.1|EC967524
EST:     CATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: CATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|110384574|gb|EC949021.1|EC949021
EST:     CAATAATTTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: CAATAA-TTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|110425951|gb|EC992347.1|EC992347
EST:     TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|26264288|gb|CA815351.1|CA815351
EST:     TCAACAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|34543784|gb|CF512016.1|CF512016
EST:     TAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTCATTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|26266198|gb|CA817261.1|CA817261
EST:     TCAACAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|27583949|gb|CB006644.1|CB006644
EST:     TGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|110687266|gb|EE064524.1|EE064524
EST:     TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: TCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
EST: gi|37188187|gb|CF607536.1|CF607536
EST:     CAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAG                         TTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT
genomic: CAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctcc ... gctgttgcagTTGAATTTTCAAAAGCAATGGCTGGCAGAGCTCAAATCCCCACTAAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGTCCGATCTCTACGGCATTCAATAATTTCTTCTCCATACCTGCGTTTCGATCCATCTCTGAGTTCAAGgtactgctccaatctatattcccaattcaatcaatcgaattctaggttagatacaatcgtttggatgctgagaaaataatgagaaacgaaagaaaatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa