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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCGCTCGGGAGGTGAGGGAGAGTTGTTGGCTGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGGgtaagccctaatacctctctctctgcgcttctctatctacttctctttctaactcacagtctgagacatgggcttctgtgcgtggtgtag

Basic information

species Vitis vinifera
transcript Vv05s0062g00120.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710440|gb|EE086775.1|EE086775
EST:     AGGGAGAGTTGTTGGCAGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGG                         GTATCTCACGAGACTCCATGCATAAGAGGCGGGCAACTGGAGGCAAGAAGA
genomic: AGGGAGAGTTGTTGGCTGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGGgtaagcccta ... cgtggtgtagGTATCTCACGAGACTCCATGCATAAGAGGCGGGCAACTGGAGGCAAGAAGA
EST: gi|349827019|gb|FQ419110.1|FQ419110
EST:     AGGGAGAGTTGTTGGCTGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGG                         GTATCTCACGAGACTCCATGCATAAGAGGCGGGCAACTGGAGGCAAGAAGA
genomic: AGGGAGAGTTGTTGGCTGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGGgtaagcccta ... cgtggtgtagGTATCTCACGAGACTCCATGCATAAGAGGCGGGCAACTGGAGGCAAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTCGCTCGGGAGGTGAGGGAGAGTTGTTGGCTGCCGGTCTCTTCTTCGCAGCTCTGTAAACATGGgtaagccctaatacctctctctctgcgcttctctatctacttctctttctaactcacagtctgagacatgggcttctgtgcgtggtgtag

- - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC