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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTTTCTCTCTCTAAAACCCTTCATTTCGTGAAGTTACAGCTTCTGCAACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGgtatgctccattcccgtacattttgtggcattctaacaattgggttctgcccctttcactagattctgttatcgttgatctcatcttccatgttgttcttgcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00340.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718112|gb|FC066924.1|FC066924
EST:     AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCG                         GATCGCTAGGAACAGCACCCATCAG
genomic: AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGgtatgctcca ... gttcttgcagGATCGCTAGGAACAGCACCCATCAG
EST: gi|71859154|gb|DT008209.1|DT008209
EST:     AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCG                         GATCGCTAGGAACAGCACCCATCAG
genomic: AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGgtatgctcca ... gttcttgcagGATCGCTAGGAACAGCACCCATCAG
EST: gi|110731644|gb|EE106246.1|EE106246
EST:     AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCG                         GATCGCTAGGAACAGCACCCATCAG
genomic: AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGgtatgctcca ... gttcttgcagGATCGCTAGGAACAGCACCCATCAG
EST: gi|71859121|gb|DT008176.1|DT008176
EST:     AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCG                         GATCGCTAGGAACAGCACCCATCAG
genomic: AACTCCCCAGCCATGTACCGTTTCGCCACCAGTCTCGCTTCCAAGGCTCGgtatgctcca ... gttcttgcagGATCGCTAGGAACAGCACCCATCAG