1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTTCTGGTTCGATAACCAGTCCAAGCCCAAGCAAGGCGCGGCTTGGGGGACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctctcgctcgttatttctttaatctttggtttcgaattttttcttctgtttggttgatcggaaaacacgcaggaaagtagtggaactttaattt...
species | Vitis vinifera |
transcript | Vv05s0049g01770.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110381761|gb|EC935318.1|EC935318
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTGGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110685840|gb|EE062914.1|EE062914
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30133607|gb|CB918946.1|CB918946
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|77584480|gb|DV221309.1|DV221309
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|77584572|gb|DV221367.1|DV221367
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110686380|gb|EE063948.1|EE063948
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30129212|gb|CB914551.1|CB914551
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: CGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|77580010|gb|DV218885.1|DV218885
genomic: CGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|29782677|gb|CB348195.2|CB348195
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110427971|gb|EC994428.1|EC994428
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30135899|gb|CB921237.1|CB921237
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110724989|gb|EE101297.1|EE101297
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|161712027|gb|FC059592.1|FC059592
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110732987|gb|EE108752.1|EE108752
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|351040235|gb|FQ425321.1|FQ425321
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30130346|gb|CB915685.1|CB915685
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110731346|gb|EE105675.1|EE105675
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30130329|gb|CB915668.1|CB915668
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|351046061|gb|FQ441444.1|FQ441444
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|351015262|gb|FQ445546.1|FQ445546
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30131970|gb|CB917309.1|CB917309
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110697840|gb|EE075280.1|EE075280
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110721728|gb|EE097336.1|EE097336
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110731029|gb|EE108785.1|EE108785
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|30132754|gb|CB918093.1|CB918093
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|351027640|gb|FQ446807.1|FQ446807
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110375910|gb|EC940937.1|EC940937
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTTEST: gi|110703148|gb|EE079739.1|EE079739
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
EST: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTG TCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
genomic: ACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctct ... ctttgtgcagTCTGTATGATCAGATATTTAAGCCCAGCAAGTTGCCAGCCAATGCAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCTGGTTCGATAACCAGTCCAAGCCCAAGCAAGGCGCGGCTTGGGGGACCTCTCTTCGCAAGGCTTACACCTTCGAAACCGTCGAAGAATTTTGGTGgtatctctctcgctcgttatttctttaatctttggtttcgaattttttcttctgtttggttgatcggaaaacacgcaggaaagtagtggaactttaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaag