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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTCCACAACCTCTCCACTCTCTCCCAAGCCAAAACACAAGCTGCCGGCATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttctttttaatttcattatctgccttcagtttatattatttatattatcttgttgttgaagcaacgttttttgaaattttggtgaatcgtag

Basic information

species Vitis vinifera
transcript Vv05s0049g01470.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964637|gb|GW838440.1|GW838440
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|349812735|gb|FQ409894.1|FQ409894
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|37190379|gb|CF609728.1|CF609728
EST:     ATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTTGCCAAG                         CTGCTAGGGGTAGGGAGATATTGGAG
genomic: ATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTT-GCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAG
EST: gi|349815651|gb|FQ400807.1|FQ400807
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351044677|gb|FQ443208.1|FQ443208
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|349812781|gb|FQ410423.1|FQ410423
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110718784|gb|EE096009.1|EE096009
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCAGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|161713410|gb|FC063390.1|FC063390
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110730524|gb|EE107704.1|EE107704
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351044047|gb|FQ452720.1|FQ452720
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110687005|gb|EE064039.1|EE064039
EST:     CGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351032507|gb|FQ458872.1|FQ458872
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT