1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCCAGTTTTCTCCCTGCAAATCTAGAGTGTTCTCACCTACAATCACTCCTTGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgttcatttcactcgttctgtgttttccttttattttctatttttcattttttgggctgtttgattcttttgctggatctgggcgaattggggg...
species | Vitis vinifera |
transcript | Vv05s0049g01180.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGTTGCAGATCTC TTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTTEST: gi|71855436|gb|DT004491.1|DT004491
genomic: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgtt ... gcaatttcagTTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
EST: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTC TTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTTEST: gi|110357412|gb|EC920933.1|EC920933
genomic: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgtt ... gcaatttcagTTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
EST: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTC TTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTTEST: gi|161720939|gb|FC070673.1|FC070673
genomic: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgtt ... gcaatttcagTTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
EST: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTC TTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTTEST: gi|110722017|gb|EE097877.1|EE097877
genomic: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgtt ... gcaatttcagTTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
EST: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTC TTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
genomic: TGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgtt ... gcaatttcagTTATGGGACCCTCATTCTAATCTCCATTTATTGACTTGAAAGTGGGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGTTTTCTCCCTGCAAATCTAGAGTGTTCTCACCTACAATCACTCCTTGTCTTTGATTCTTTGATTTTGATTCCGTCTCCAGCCTGCTGCAGATCTCgtgagttgttcatttcactcgttctgtgttttccttttattttctatttttcattttttgggctgtttgattcttttgctggatctgggcgaattggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT