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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGGAGAAGATAACCACCCATATACGAGATGAAGATAATGGTGGCGATAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaatccaaactctcaagttattcagtatctgtaatttcatcatcatccaataacaatcgccaacccacgatcag

Basic information

species Vitis vinifera
transcript Vv05s0049g00470.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709021|gb|FC058801.1|FC058801
EST:     TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAG                         AGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
genomic: TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaa ... ccacgatcagAGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
EST: gi|294964164|gb|GW837967.1|GW837967
EST:     TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAG                         AGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
genomic: TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaa ... ccacgatcagAGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
EST: gi|27582621|gb|CB005316.1|CB005316
EST:     TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAG                         AGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
genomic: TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaa ... ccacgatcagAGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
EST: gi|161712333|gb|FC061658.1|FC061658
EST:     TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAG                         AGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG
genomic: TAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaa ... ccacgatcagAGCGGCGTGGAGACCAGCAACGTCAAGATGTCGATGAACCCCTTTTGTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCCGGAGAAGATAACCACCCATATACGAGATGAAGATAATGGTGGCGATAAAGCGTGTTGTGGACTACGCTGTCAAGATCAGAGTCAAATCCGACAAGgtaacccaaatccaaactctcaagttattcagtatctgtaatttcatcatcatccaataacaatcgccaacccacgatcag

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