1 5' 3' | 2 5' 3' |
TCAGAAAATACAGAGGGGAAGCAGAAGGGAGCAAAAACCCTAGCAAGTAGAGGATGATCTCAAACATCAgtaagctcaatccatccatgtttcataaaaaagtggtgttattattgaatttctttgcgttcttccatgcttctgattctacgttttttaggggtacatt...
species | Vitis vinifera |
transcript | Vv05s0029g01210.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTAGCAAGTAGAGGATGATCTCAAACATCA AGTTTCTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTGEST: gi|110710061|gb|EE086067.1|EE086067
genomic: CCTAGCAAGTAGAGGATGATCTCAAACATCAgtaagctcaa ... aaaatttcagAGTTTCTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTG
EST: AAGGGAGCAAAAACCCTAGCAAGTAGAGGATGATCTCAAACATCA AGTTTCTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTGEST: gi|30128410|gb|CB913749.1|CB913749
genomic: AAGGGAGCAAAAACCCTAGCAAGTAGAGGATGATCTCAAACATCAgtaagctcaa ... aaaatttcagAGTTTCTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTG
EST: AGTAGAGGATGATCTCAAACATCA AGTTTGTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTG
genomic: AGTAGAGGATGATCTCAAACATCAgtaagctcaa ... aaaatttcagAGTTTCTCAACACAGTATCGAATGTGCCTGGCATTGTGTTGGGGCTATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAAAATACAGAGGGGAAGCAGAAGGGAGCAAAAACCCTAGCAAGTAGAGGATGATCTCAAACATCAgtaagctcaatccatccatgtttcataaaaaagtggtgttattattgaatttctttgcgttcttccatgcttctgattctacgttttttaggggtacatt
- - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa