Sequence
atgc intronic sequence ATGC exonic sequenceAAAGGGAAAATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactctctctcatttgttcaattttttcttatttatttatcattttgctgtttctttttcctattgtgtctcggatctctacattgattcgccac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
AAAGGGAAAATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactctctctcatttgttcaattttttcttatttatttatcattttgctgtttctttttcctattgtgtctcggatctctacattgatt-cgccac-------
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TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctt------tccaatctcaac--attcatcgctcgctctgttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt
upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAGGGAAAATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactctctctcatttgttcaattttttcttatttatttatcattttgctgtttctttttcctattgtgtctcggat--ctctacattgattcgccac
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CGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAGCCAGTGTTCTTGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGgtatgtacatttcctcaattcgtttctgaaatttagctgaaatgcgattagattaggctaattctcgatgtttgttcgatttgcttgacgttgacatttg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707623|gb|FC056026.1|FC056026EST: CAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAG GAATTTCTCTAAAGACTCAAGAACTTTATGCTCTTGTTTTTGCAACTCGCT
genomic: CAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactc ... ttttatgcagGAATTTCTCTAAAGACTCAAGAACTTTATGCTCTTGTTTTTGCAACTCGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGGGAAAATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactctctctcatttgttcaattttttcttatttatttatcattttgctgtttctttttcctattgtgtctcggatctctacattgattcgccac
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