1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTTGGTTCTCACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCCGAGCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctccgatcttctcctctcaccttacctcttcaatttaaactctttccttatctaccatgttgtttgtgtgtctgtgatttctatttctttttt...
species | Vitis vinifera |
transcript | Vv05s0029g00060.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|349807865|gb|FQ402256.1|FQ402256
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71890565|gb|DT039620.1|DT039620
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|349812708|gb|FQ409867.1|FQ409867
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGATCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71873838|gb|DT022893.1|DT022893
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|110372532|gb|EC936708.1|EC936708
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71871639|gb|DT020694.1|DT020694
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|352786484|gb|FQ479093.1|FQ479093
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71890799|gb|DT039854.1|DT039854
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|110381320|gb|EC946647.1|EC946647
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351039396|gb|FQ461263.1|FQ461263
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|349823439|gb|FQ423250.1|FQ423250
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71864683|gb|DT013738.1|DT013738
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71868560|gb|DT017615.1|DT017615
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351046057|gb|FQ441440.1|FQ441440
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|161713162|gb|FC062502.1|FC062502
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71877393|gb|DT026448.1|DT026448
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|349820030|gb|FQ404752.1|FQ404752
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|33401619|gb|CF207246.1|CF207246
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: CTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351046098|gb|FQ442476.1|FQ442476
genomic: CTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351045231|gb|FQ451679.1|FQ451679
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAGAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|110427496|gb|EC993936.1|EC993936
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: TGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71871109|gb|DT020164.1|DT020164
genomic: TGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71871652|gb|DT020707.1|DT020707
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71867598|gb|DT016653.1|DT016653
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351043504|gb|FQ428976.1|FQ428976
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|352790540|gb|FQ478180.1|FQ478180
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|351055909|gb|FQ453370.1|FQ453370
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|71873299|gb|DT022354.1|DT022354
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCEST: gi|110358181|gb|EC922212.1|EC922212
genomic: GCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
EST: ACTCGGTGGCCCCGATA AAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
genomic: ACTCGGTGGCCCCGATAgtgcgttctc ... aatatggtagAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTGGTTCTCACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCCGAGCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAgtgcgttctccgatcttctcctctcaccttacctcttcaatttaaactctttccttatctaccatgttgtttgtgtgtctgtgatttctatttctttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcc