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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTTTGCTTCTCTTCATCCTTCTGCTGTCACCGTCAACCTTGGCTCTTCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtttatacatttttctttgtgattttttcttgatctggccttgcgcacagtttctggttggttccatttgttctttactggatttgttgttta...

Basic information

species Vitis vinifera
transcript Vv05s0020g04160.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G28930.1 (Glycine max), 5'ss of exon 1
AATTTTTTGCTTCTCTTCATCCTTCTGCTGTCACCGTCAACCTTGGCTCTTCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtttatacatttttctttgtgattttttcttgatct----ggccttgcgcacagtttctggttggttccatttgttctttactggatttgttgttta
||   ||  ||||  |||| |||  | | ||||||||||||||||||||||||||   | |  | || ||| || | |  ||||| || ||||| ||||||| ||   ||| | |  ||   | | | ||||| || |||| |    | |       | |  |||   |   |    | | | ||||| | |  || || |   
AACACTTCTCTTCCGTTCACCCTGGTTCCGTCACCGTCAACCTTGGCTCTTCCGGTCTCTTGGCCTATTCCCTTCACAGACAGAACCCCCTTCTCCCAAGgtccatccttttttc--ttcagtatcttattttctcatgatttttgggtcgaaaaatataaattcccttgtttcatgtctttcctttatttgggttcttttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128667|gb|CB914006.1|CB914006
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161714833|gb|FC063281.1|FC063281
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161706213|gb|FC054971.1|FC054971
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110398107|gb|EC964229.1|EC964229
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110395495|gb|EC961161.1|EC961161
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110413953|gb|EC979772.1|EC979772
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|37184045|gb|CF603399.1|CF603399
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110392675|gb|EC956897.1|EC956897
EST:     GCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: GCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|30304294|gb|CB981088.1|CB981088
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110722819|gb|EE099425.1|EE099425
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110390441|gb|EC955350.1|EC955350
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
genomic: CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTT-CCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
EST: gi|110720299|gb|EE096101.1|EE096101
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|71871976|gb|DT021031.1|DT021031
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110368629|gb|EC932617.1|EC932617
EST:     TACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110398374|gb|EC964689.1|EC964689
EST:     GATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: GATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110693244|gb|EE069306.1|EE069306
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110390708|gb|EC955632.1|EC955632
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
genomic: CCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCC-AAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTG
EST: gi|294965335|gb|GW837050.1|GW837050
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|71866119|gb|DT015174.1|DT015174
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|33404399|gb|CF210026.1|CF210026
EST:     CTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: CTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161708987|gb|FC060932.1|FC060932
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110719147|gb|EE096788.1|EE096788
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|37184071|gb|CF603425.1|CF603425
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110719525|gb|EE094727.1|EE094727
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|77587231|gb|DV222749.1|DV222749
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTAA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110689126|gb|EE065077.1|EE065077
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|26263940|gb|CA815003.1|CA815003
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGAC-TATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|294966029|gb|GW837396.1|GW837396
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|351027154|gb|FQ440016.1|FQ440016
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110730595|gb|EE107855.1|EE107855
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110684920|gb|EE062747.1|EE062747
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110685279|gb|EE063522.1|EE063522
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|87585474|gb|DY474177.1|DY474177
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161708899|gb|FC059645.1|FC059645
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATACTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110372611|gb|EC936793.1|EC936793
EST:     CCGGCGCCATCTCTTACTCCGTTGATAAAGCAGAATCCTCTTCTTCCAAG                         ATGGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: CCGGCGCCATCTCTTACTCCGTTGAT-AAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|34549368|gb|CF517600.1|CF517600
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110688943|gb|EE068071.1|EE068071
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|110718953|gb|EE096378.1|EE096378
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|161711825|gb|FC058745.1|FC058745
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
EST: gi|33407951|gb|CF213578.1|CF213578
EST:     TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAG                         ATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA
genomic: TCCGGCGCCATCTCTTACTCCGTTGATAAGCAGAATCCTCTTCTTCCAAGgtacaatgtt ... tttttgtcagATTGTTTGCAGTTGTGGATGATATATTCTGCTTGTTTCAAGGACATATTGA