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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGGTCAAGGGTTTGCTGTCAGAGCCGTCGTCCTCTTCGTAGCATTCTTCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctctgactcgctcttctgtcaatgcatttgtgtttggatacactcatgtgtctgatttgaactatgacag

Basic information

species Vitis vinifera
transcript Vv05s0020g03900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161711436|gb|FC061201.1|FC061201
EST:     TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|71871064|gb|DT020119.1|DT020119
EST:     TCTTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGTGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|77585608|gb|DV221898.1|DV221898
EST:     TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|71890772|gb|DT039827.1|DT039827
EST:     TCTTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGTGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|77580898|gb|DV219373.1|DV219373
EST:     TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|71855034|gb|DT004089.1|DT004089
EST:     TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|71868214|gb|DT017269.1|DT017269
EST:     TCTTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGTGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|71873149|gb|DT022204.1|DT022204
EST:     TCTTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGTGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC
EST: gi|77578681|gb|DV218125.1|DV218125
EST:     TCTTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTCGG                         GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGTGGCAAGAAGAAGGC
genomic: TCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctct ... actatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCGGTCAAGGGTTTGCTGTCAGAGCCGTCGTCCTCTTCGTAGCATTCTTCCTCTGAAGCTACCCTCACTCCCTCATTTCCTTCCAGAATGGCGGTTGGgtactcctctgactcgctcttctgtcaatgcatttgtgtttggatacactcatgtgtctgatttgaactatgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC