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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATACTTCCGTAGCCCTTTCTCTCACCTTTGAGCCCTAATCCTAACCCTAGCCATGgtgagtgggcttgttttcatttctgttaaatcaattcttgtgtcgaatatggttgtttgttgttatgttaatgaattggattttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g03450.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964772|gb|GW838575.1|GW838575
EST:     CTTTGAGCGCTAATCCTAACCCTAGCCATG                         TCTCTTGTTGCAAACGAGGAATTTCAGCGCATTCTTCGTGTGCTCAACACC
genomic: CTTTGAGCCCTAATCCTAACCCTAGCCATGgtgagtgggc ... gattttgcagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
EST: gi|30136491|gb|CB921829.1|CB921829
EST:     TTGAGCTCTAATCCTAACCCTAGCCATG                         TCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
genomic: TTGAGCCCTAATCCTAACCCTAGCCATGgtgagtgggc ... gattttgcagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
EST: gi|110688699|gb|EE067547.1|EE067547
EST:     CTTTGAGCCCTAATCCTAACCCTAGCCATG                         TCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
genomic: CTTTGAGCCCTAATCCTAACCCTAGCCATGgtgagtgggc ... gattttgcagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
EST: gi|110716629|gb|EE091780.1|EE091780
EST:     CCTAACCCTAGCCATG                         TCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
genomic: CCTAACCCTAGCCATGgtgagtgggc ... gattttgcagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
EST: gi|32248682|gb|CD714501.1|CD714501
EST:     CTTTGAGCCCTAATCCTAACCCTAGCCATG                         TCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC
genomic: CTTTGAGCCCTAATCCTAACCCTAGCCATGgtgagtgggc ... gattttgcagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACC