1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTTAATGGAAAAAGCCATTCACTGGCTGGTTATAGGAAGAGTTGTTGGTATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcctcgcatgttaatctttatatcccatttatgagtaggttttccatttcaattaacccttgtttcaactgagatcagtcacaaaaagtcaaa...
species | Vitis vinifera |
transcript | Vv05s0020g03200.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|352786447|gb|FQ479056.1|FQ479056
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351055343|gb|FQ441941.1|FQ441941
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|349822939|gb|FQ399918.1|FQ399918
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGATAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351036339|gb|FQ458714.1|FQ458714
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351039310|gb|FQ461177.1|FQ461177
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351049434|gb|FQ450035.1|FQ450035
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGATAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351051773|gb|FQ455187.1|FQ455187
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAACAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351035817|gb|FQ463662.1|FQ463662
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351038474|gb|FQ464340.1|FQ464340
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGATGGACACEST: gi|349824845|gb|FQ414703.1|FQ414703
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGATAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351038444|gb|FQ464310.1|FQ464310
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGATAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351034444|gb|FQ463257.1|FQ463257
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351049225|gb|FQ449947.1|FQ449947
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351048095|gb|FQ441267.1|FQ441267
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGATGGACACEST: gi|351053780|gb|FQ441546.1|FQ441546
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAACAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351037593|gb|FQ462576.1|FQ462576
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351013942|gb|FQ434094.1|FQ434094
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351048233|gb|FQ442203.1|FQ442203
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAACAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|352793951|gb|FQ479193.1|FQ479193
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351030375|gb|FQ432313.1|FQ432313
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351032566|gb|FQ458931.1|FQ458931
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351048148|gb|FQ442118.1|FQ442118
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAACAG CATTTTGCATACCGGAGCTACACAGTACCAGGACATTGCACTGCTGGACACEST: gi|161715874|gb|FC067453.1|FC067453
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351052302|gb|FQ455474.1|FQ455474
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351031893|gb|FQ460150.1|FQ460150
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351022726|gb|FQ428635.1|FQ428635
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|349815985|gb|FQ403626.1|FQ403626
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351042120|gb|FQ456330.1|FQ456330
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351031200|gb|FQ445027.1|FQ445027
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351039295|gb|FQ461162.1|FQ461162
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAACAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACEST: gi|351047673|gb|FQ455070.1|FQ455070
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
EST: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAG CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
genomic: TATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcc ... tctatggcagCATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTAATGGAAAAAGCCATTCACTGGCTGGTTATAGGAAGAGTTGTTGGTATGAGGAAGAGATTGAAGAGAACTTGAGATGGTGCTTTGCGCTCAATAGgtattaatcctcgcatgttaatctttatatcccatttatgagtaggttttccatttcaattaacccttgtttcaactgagatcagtcacaaaaagtcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa