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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGACTCCACGGCGCACGTTAGCAGATCACGGGACCTCGACAAGCTCCTTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctctcaaaacagtcgtgtttgtttatcgcatttatttttattatttttatttttttgggtgtttcaatagttgattttttggtgttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g02820.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 1
GGCGGACTCCACGGCGCACGTT---AGCAGATCACGGGACCTCGACAAGCTCCTTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtct--ttctctcaaaacagtcgtgtttgtttatcgcatttatttttat--tatttttatttt-tttgggtgtttcaatagttgattttttggtgttgcag
    |   | | |||| |        |  ||||  ||||||||||||||||||||||||| || ||| |||| || || ||||  ||||| || ||| | ||||| |  ||            || | | |   |||  |  ||  | |||   |  |  || | | | |   | | ||  |   |   | | |     |  | 
---AGCTCCAATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattactctttcttcttcttctataactattactattcctgttacagtgctactactctctctctctctctctctctctctctctctctctctata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712941|gb|EE088425.1|EE088425
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|30300928|gb|CB977722.1|CB977722
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110711880|gb|EE088865.1|EE088865
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110720200|gb|EE095912.1|EE095912
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110718368|gb|EE095121.1|EE095121
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110711482|gb|EE088011.1|EE088011
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110709674|gb|EE085351.1|EE085351
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110712191|gb|EE089528.1|EE089528
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110694070|gb|EE070853.1|EE070853
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110713830|gb|EE090092.1|EE090092
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|161719612|gb|FC064545.1|FC064545
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
EST: gi|110711335|gb|EE087704.1|EE087704
EST:     TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAG                         TTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT
genomic: TTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGgtctttctct ... ggtgttgcagTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGT