Sequence
atgc intronic sequence ATGC exonic sequenceGTAGCTTTATGGATGATGGGTTTCGGTGTTCTGAAAATGGGCGTCCTGATATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctttaccatctttttgcctttttgcttttcctgtttgattgctgagaaaatgtagaagaacccacttactaaactggaaaaagaaaacactcgctta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G01950.1 (Glycine max), 5'ss of exon 1
GTAGCTTTATGGATGATGGGTTTCGGTGTTCTGAAAATGGGCGTCCTGATATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctt-taccatctttttgcctttttgcttttcctgtttgattgctgagaaaatgtagaagaacccacttactaaactggaaaaagaaaacactcgctta-----
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GCAGCTTTCTGGATGAAGGTTTTCGGTGTTCTGAGAATGGACGACGTGATTTGTTTTACACCAAGTGGAGGTGGCAGCCCAAAGGTTGCAACTTGCCCAGgtacacgtttgatgtttgttttccattgctttc---gttttaatacttttcaagtt---gattacgttgttaatgttcttttttcactaatcgtttggtttctgag
upper sequence: Vv05s0020g02810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G11220.1 (Glycine max), 5'ss of exon 1
GTAGCTTTATGGATGATGGGTTTCGGTGTTCTGAAAATGGGCGTCCTGATATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctttaccatctttttgcctttttgcttttcctgtt-tgattgctgagaaaat-gta-gaagaacccacttactaaactggaaaaagaaaacactcgctta
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GCAGCTTCCTTGATGGAGGATTTCGGTGTTCTGAGAATGGAAGACCTGATTTGTTCTACACAAAGTGGAGGTGGCAACCCAAAGCTTGCAACTTGCCCAGgtacacttatgttatgatgctttttttttttttttgtcgtcatctttggcacttttgcatgtaaaaatgatataataaagtatgaaattcatacaaattt---
upper sequence: Vv05s0020g02810.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G38760.1 (Glycine max), 5'ss of exon 1
GTAGCTTTATGGATGATGGGTTTCGGTGTTCTGAAAATGGGCGTCCTGATATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctttaccatctttttgcctttttgcttttcctgtttgattgctgagaaaatgtagaagaacccacttactaa--actggaaaaagaaaacactcgctta
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GCAGGTTTTTGGATGAAGGTTTTCGGTGTTCTGAGAATGGACGACGTGATTTGTTTTACACCAAGTGGAGGTGGCAGCCTAAAGGTTGCAACTTGCCCAGgtacacgtttgatgtttcatgtttgtttttccatggtttcatt--taatactttccaagtttattatgttgttaatgtttttcttcagtgatcgtttagtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110718383|gb|EE095152.1|EE095152EST: ATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAG ATTTAATGCAACTCTGATGTTGGAGAGACTGCGGAACAAACGGCTAGCATT
genomic: ATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctttacc ... tggaaagcagATTTAATGCAACTCTGATGTTGGAGAGACTGCGGAACAAACGGCTAGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGCTTTATGGATGATGGGTTTCGGTGTTCTGAAAATGGGCGTCCTGATATGTTCTATACTAAATGGCGTTGGCAGCCCAAGGATTGCAACTTGCCCAGgttctttaccatctttttgcctttttgcttttcctgtttgattgctgagaaaatgtagaagaacccacttactaaactggaaaaagaaaacactcgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa