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TAGCCAGGCTGCTGCTTCAAATCCTCAGAGACTTACTCCTCAGTGTTCCCATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaatatttttattttctgggtagtcaagcaaaggaggaattattgcttgggacttagtgttgagtactgggtcttgttcattttgttggatttga...
species | Vitis vinifera |
transcript | Vv05s0020g02130.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|352776933|gb|FQ474240.1|FQ474240
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|352777281|gb|FQ473915.1|FQ473915
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|352773800|gb|FQ472582.1|FQ472582
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|352781778|gb|FQ469076.1|FQ469076
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|161713384|gb|FC063376.1|FC063376
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|352774221|gb|FQ474744.1|FQ474744
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|294967320|gb|GW836674.1|GW836674
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTGGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCAC-TTCGGATAGGGAGGAGEST: gi|352768724|gb|FQ467936.1|FQ467936
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGEST: gi|294963953|gb|GW836828.1|GW836828
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
EST: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAG GCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
genomic: ATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaata ... ttatgtacagGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCAGGCTGCTGCTTCAAATCCTCAGAGACTTACTCCTCAGTGTTCCCATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGgtccggaatatttttattttctgggtagtcaagcaaaggaggaattattgcttgggacttagtgttgagtactgggtcttgttcattttgttggatttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggaa