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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTAGCGATTGCTGTCTGCAGTGTTCGATTTTGTTTTTCTGCAAAGATAAATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattttccttctctttccctccttatttttctgagaactaattggaacctgatgcgtgtaaactggaaaatctgacatatcttctctttccag

Basic information

species Vitis vinifera
transcript Vv05s0020g01970.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577813|gb|DV217658.1|DV217658
EST:     AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACAT                         TTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
genomic: AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattt ... ctctttccagTTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
EST: gi|77578716|gb|DV218154.1|DV218154
EST:     AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACAT                         TTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
genomic: AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattt ... ctctttccagTTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
EST: gi|71877086|gb|DT026141.1|DT026141
EST:     AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACAT                         TTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
genomic: AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattt ... ctctttccagTTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
EST: gi|110386615|gb|EC951229.1|EC951229
EST:     AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACAT                         TTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
genomic: AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattt ... ctctttccagTTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
EST: gi|161709668|gb|FC058023.1|FC058023
EST:     AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACAT                         TTGAGTTGAAGACACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG
genomic: AATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattt ... ctctttccagTTGAGTTGAAGAAACAAAGTTCATGCTCAATTCACCTTGTCAATAAATCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTAGCGATTGCTGTCTGCAGTGTTCGATTTTGTTTTTCTGCAAAGATAAATCGCTATGGAGCTCTTGGAGATTCAACCACGCGAACTCAAGTTCACATgtaagaattttccttctctttccctccttatttttctgagaactaattggaacctgatgcgtgtaaactggaaaatctgacatatcttctctttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT