1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCTTCTCTCGTCCTTCACGTTTCCTGgtatgctttctcttctaattttcctttggtttccgagaagattaaataagaatgtgatatttaaatttgtctttcacttcttttttttccccaagttctc...
species | Vitis vinifera |
transcript | Vv05s0020g01480.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTTCTCTCGTCCTTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|30298272|gb|CB975066.1|CB975066
genomic: AGCTTCTCTCGTCCTTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: AGCTTCTCTCGTCCTTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|110722148|gb|EE098126.1|EE098126
genomic: AGCTTCTCTCGTCCTTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CTCGTCCTTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|32245894|gb|CD711713.1|CD711713
genomic: CTCGTCCTTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|110697003|gb|EE073611.1|EE073611
genomic: CACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CTCGTCCTTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|110696043|gb|EE074748.1|EE074748
genomic: CTCGTCCTTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: TTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|27582593|gb|CB005288.1|CB005288
genomic: TTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|27584673|gb|CB007368.1|CB007368
genomic: CACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAEST: gi|110688561|gb|EE067257.1|EE067257
genomic: CACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
EST: CTCGTCCTTCACGTTTCCTG ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
genomic: CTCGTCCTTCACGTTTCCTGgtatgctttc ... aaaattacagATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTCTCTCGTCCTTCACGTTTCCTGgtatgctttctcttctaattttcctttggtttccgagaagattaaataagaatgtgatatttaaatttgtctttcacttcttttttttccccaagttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc