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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGTGAAAACTCTCTCGAAGATTCCGAAACCCTAGAGCTCTTCCATGGCCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttctcactatctctatccatccgtttggttgctgagaagctccaggaaaatgaatcagattttttgaatctgatgttgtgagttcttttggttt...

Basic information

species Vitis vinifera
transcript Vv05s0020g01440.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877047|gb|DT026102.1|DT026102
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77582258|gb|DV220092.1|DV220092
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77578306|gb|DV217933.1|DV217933
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77584529|gb|DV221330.1|DV221330
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77581182|gb|DV219518.1|DV219518
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|110417657|gb|EC983731.1|EC983731
EST:     CAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|110405060|gb|EC970590.1|EC970590
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|34319828|gb|CF372582.1|CF372582
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|110360839|gb|EC924252.1|EC924252
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|71872568|gb|DT021623.1|DT021623
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|71890487|gb|DT039542.1|DT039542
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77578619|gb|DV218101.1|DV218101
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|77580102|gb|DV218941.1|DV218941
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|110379884|gb|EC945106.1|EC945106
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|71868186|gb|DT017241.1|DT017241
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|71873162|gb|DT022217.1|DT022217
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|71874260|gb|DT023315.1|DT023315
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|110417988|gb|EC984094.1|EC984094
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
EST: gi|351016864|gb|FQ424291.1|FQ424291
EST:     CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCC                         AGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG
genomic: CCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttct ... ttgtttgcagAGGAAGGAAAATGTGACACCGATCGGCTCAAAAATCGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTGTGAAAACTCTCTCGAAGATTCCGAAACCCTAGAGCTCTTCCATGGCCAACTCCGATTCCACTCCTCCTCTTCCCGTCGTCGCTCCACTATCATCCgtaatcttctcactatctctatccatccgtttggttgctgagaagctccaggaaaatgaatcagattttttgaatctgatgttgtgagttcttttggttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa