1 5' 3' | 2 5' 3' |
TCGCACTTGAAGAACGTAGGAGATCGGCGGCCGCCGGCTGTGCCCGTCGACAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactttttgttgaaggttttgtttggttggtttctgagaaaggaaagaacatgtttggttggtaagaactttttggaaaaaaaaatcttcctcct...
species | Vitis vinifera |
transcript | Vv05s0020g01370.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGG AGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCCEST: gi|110407654|gb|EC973263.1|EC973263
genomic: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactt ... tttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAATTTCCTCGAGGAGCGAGATCCCC
EST: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGG AGGGTGCCCCGAGATTTAATTCTGAAAAT
genomic: CAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactt ... tttgtttaagAGGGTGCCCCGAGATTTAATTCTGAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCACTTGAAGAACGTAGGAGATCGGCGGCCGCCGGCTGTGCCCGTCGACAAAGTCGGTGTCTCGAAGACTCGTGATGATATCGGTTCTGGCTCCTCGGgtaagaactttttgttgaaggttttgtttggttggtttctgagaaaggaaagaacatgtttggttggtaagaactttttggaaaaaaaaatcttcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc