Sequence
atgc intronic sequence ATGC exonic sequenceAAGAGACCTTTGTACCATTTCGCGGAATCAAGAATGATCTTCAAGGGAGGCTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAGgtatgcctttctcctcccatcccatatatgtatgtatcttatgactataggaatggggaatttctcttatacatattgttctttcagatctctctattgctcagctttgtcaatagtttgatgatgatgatgatgatgatgatgttaggctggtaacaaatttaattgtttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G03600.1 (Glycine max), 5'ss of exon 1
AAGAGACCTTTGTACCATTTCGCGGAATCAAGAATGATCTTCAAGGGAGGCTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAGgtatgcctttctcctcccatcccatatatgtatgtatcttatgactataggaatggggaatttctcttatacatattgttctttcagatctctctattgctcagctttgtcaatagtttgatgatgatgatgatgatgatgatgttaggctggtaacaaatttaattgtttgtag
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AAGAGACATTTGTTCCGTTTCGTGGAATTAAAAATGATCTTCAAGGGAGATTGATGTGTTACAAGCAAGACTGGATTGGTGGTCTCACGGCAGGGTTCAGgtacaccttt----tcttatgctaggaaagattgtaacttattttcctagga-tagtggattttgatagcatgaaatatgctt--gaatgacagaaaggttttgctt--------------------------------------------------------------------
upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G14520.1 (Glycine max), 5'ss of exon 1
AAGAGACCTTTGTACCATTTCGCGGAATCAAGAATGATCTTCAAGGGAGGCTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAGgtatgcctttctcctcccatcccatatatgtatgtatcttatgactataggaatggggaatttctcttatacatattgttctttcagatctctctattgctcagctttgtcaatagtttgatgatgatgatgatgatgatgatgttaggctggtaacaaatttaattgtttgtag
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AAGAGACATTTGTTCCGTTTTGTGAAATTAAAAATGATCTTCAAGGGAGATTGATGTGTTACAAGCAAGACTGGATTGGTGGTCTCACGGCAGGCTTCAGgtacacctttcttatgcta------ggaaagatttaacttattttcttagga-tagtggatttttatagaatctaatatgcttgaatgaagacagaaag----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71854731|gb|DT003786.1|DT003786EST: CTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAG GATTTTGGCCCCCACCACATACATATTTTTTGCTTCAGCAATTCCAGTTAT
genomic: CTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAGgtatgccttt ... ttgtttgtagGATTTTGGCCCCCACCACATACATATTTTTTGCTTCAGCAATTCCAGTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGACCTTTGTACCATTTCGCGGAATCAAGAATGATCTTCAAGGGAGGCTATTGTGTTACAAGCAAGACTGGACTGGTGGTCTCAGGGCAGGCTTCAGgtatgcctttctcctcccatcccatatatgtatgtatcttatgactataggaatggggaatttctcttatacatattgttctttcagatctctctattgctcagctttgtcaatagtttgatgatgatgatgatgatgatgatgttaggctggtaacaaatttaattgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG