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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt...

Basic information

species Vitis vinifera
transcript Vv04s0210g00180.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g38200.1 (Oryza sativa), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttt--tgattt---gttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattt-tccttttctcgattttagaggtagaggatcatttggt
|||| | || || || || ||||| ||  ||||||| || || ||||||||||| ||||| |||||||||||||| || || |||||||| ||||||||||| |   || ||    ||  | |    ||   | |||  | | |  |||| |||  |   ||   ||  | | | |  |||    |||     |    ||  |   
GCACGACAACGTCGACATTGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGGCTTGAGCACGAGGTCGTCCCTGGCGTCGTGGAGAGCCTTAAGgtatggcgaattccgcttgctgctaactcacctagttgatgtagt-gtttgccagggtgcttgggttaatgcgtgtgccgag---agaaccccaaatgcaactt--

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g40310.2 (Oryza sativa), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttgg-ccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt-----
||||||| | || || || ||||| ||  ||||||| || || || ||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||   |     |      || |  ||| |     ||||  | |||      || || |        |    | ||    | ||  | || |   | |  ||     
GCACCAGGACGTCGACATCGTCGTCATCAGGGAGAACACCGAGGGGGAGTACTCGGGGCTCGAGCACGAGGTCGTGCCCGGCGTCGTCGAGAGCCTCAAGgtacgggccaat------ctcgcgtgacgcgcgctttgctctgttgttgtgtgttggttggagaatcgccacccgtgcatcgattttgacgtctaatgtgttcctt

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G025366_T02 (Zea mays), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgt----------tttgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
|||| ||  ||| || || ||||| ||  ||||||| || || |||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||           | | || |      |   || | ||| ||||| ||    ||| || ||  ||||  | |  |   || |  ||   |    ||    | | ||    
GCACGAGGGTGTCGACATCGTCGTAATCAGGGAGAACACCGAGGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTACCCGGGGTCGTTGAGAGCCTCAAGgtactacggagtgtcggttggggtcggctgcgtttcatgtttattatgat--ttttccgata-tgttatactccctccttttatat---aagtatatgacaccgtt----

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttccca-atgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
|||| | || ||||| || ||||| ||||||||||| |  || ||||||||||||||||||||||| ||||||||||| || |||||||| || || ||||| | ||    |   |   |||    |    || |   || || |     | ||||         |   |    |  |   |    |   | | |  |   
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta-

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G04780.1 (Glycine max), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt----
 ||  | ||||| ||||| || || ||  ||||||| || |||||||||||||| || ||||| ||||||||||||||||| || || |||||||||||||| |    ||  | |   || |  |  |     ||||  |   |      |  || | |   | |   ||  |||  | | | |   |  |||||||  |    
CCATGATAATGTTGATATTGTTGTCATCAGGGAGAACACCGAAGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTTGTTGAAAGCCTTAAGgtgtgctcttcctctcctctcgctttctcacactttttaca--tatagggtcttgctaagggtactagttaacgaactaaaaagagaa--atcatttactttga

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G22640.1 (Glycine max), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt---
 ||  | ||||||||||| || || ||  ||||||| || |||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||||||      ||    |  ||| |  |  |     ||||      ||  |||   ||||   || |   ||| || ||| |  |  ||   | |  |    |   
CCATGATAATGTGGATATCGTTGTCATCAGGGAGAACACCGAAGGCGAATACTCTGGCCTCGAACACGAGGTCGTTCCCGGCGTTGTTGAAAGCCTTAAGgtgcgttcttccactcccctcgctttctcacgctttttatatattatcaaatttgtt---ttctatgtttttctattatttatttatttgtttttgaaattag

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G08920.1 (Glycine max), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttcccaat-gctgttcaattttccttttctcgattttagaggtagaggatcatttggt----
 ||| | || || || || ||||| ||  ||||||| || || ||||||||||| || ||||| ||||||||||| ||||| || || |||||||| |||||  | | |     | ||  | |||      |  |   ||    |   |   ||||   ||||    |||    ||| |||     |    || |   |      
CCACGACAACGTTGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTCCCCGGCGTGGTCGAAAGCCTCAAGgtactcactcacgttcacggtttctttc---tgctcaagctaaataatagcagctgaataattaggttttat--gatcttaataaaatgaaattaagagaatgaa

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttt-tgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
 ||| | ||||| ||||| || |||||  | ||||| || ||||| |||||||| || |||||||| ||||| ||||| ||||| || || |||||||||||     || | | ||||    |  || |  |  |       ||   ||  |  |||  |  |    || | |  ||| |    ||||             
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttttagtccaaattgtgatccctt-ttgtatacatgatgttgt-tgaattgtttgtgtag-------------

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S101_151V6.1 (Physcomitrella patens), 5'ss of exon 1
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttg--ttattaccttgtctgatggt--tattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
 ||  | |||||  | || || || |||||||||||||| ||||| ||||| || || || |||||||||||||| ||||| ||||| || |||||||||||    ||||   ||  |  | ||    ||     || | |      | || | || | |  ||| ||   | ||      ||      |     |  |||   
CCATGACAATGTCAACATTGTGGTTATTCGGGAGAATACCGAAGGGGAGTATTCTGGTCTTGAGCACGAGGTCGTCCCCGGGGTCGTCGAGAGCCTTAAGgtacatatttcgttttctgacctgaaaaataacactactctatgttgtgcctagtgat-tgtaatattttctgtccaagcatttttttcacgcctttgttt---

upper sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S212_85V6.2 (Physcomitrella patens), 5'ss of exon 2
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgat-ttgttatt--accttgtc--tgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
 ||| | |||||  | || || || ||||| ||||| || ||||| |||||||| || || |||||||||||||| ||||| || || || ||||| |||||  | || || || ||  ||| |     | ||    | |||      |    | ||| |  ||| | | |||| |||  ||    | | |          |   
CCACGATAATGTCAACATTGTGGTTATTCGAGAGAACACTGAAGGAGAGTACTCTGGTCTTGAGCACGAGGTCGTCCCCGGGGTTGTCGAGAGCCTCAAGgtaattatcttattcttgaaccctacaagtaatacacaatttaatgcgtatgaactgcgg--caaatcttctttactcatttcgttatgcacttttctgcat---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716145|gb|FC069488.1|FC069488
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCCTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|110702504|gb|EE081292.1|EE081292
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|110383796|gb|EC948197.1|EC948197
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|71869488|gb|DT018543.1|DT018543
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAG
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAG
EST: gi|110415520|gb|EC981433.1|EC981433
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|110374228|gb|EC938864.1|EC938864
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|161720273|gb|FC070534.1|FC070534
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
EST: gi|351046732|gb|FQ453348.1|FQ453348
EST:     ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAG                         GTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgattt ... catttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTAT