Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATACGAAAGCACCCGGTTCACTTGGCAGCAAACTTACGAGCGCTGCTGCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgttttttaaaggccacacatgtatctatttttatgatttaaggtagatacattttgtaggagggagaaagatgttacacataaatatttaaatctggttggtattctttcccctgcag

Basic information

species Vitis vinifera
transcript Vv04s0079g00790.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864040|gb|DT013095.1|DT013095
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71861471|gb|DT010526.1|DT010526
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862454|gb|DT011509.1|DT011509
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862187|gb|DT011242.1|DT011242
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71860170|gb|DT009225.1|DT009225
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862611|gb|DT011666.1|DT011666
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862227|gb|DT011282.1|DT011282
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864741|gb|DT013796.1|DT013796
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71860816|gb|DT009871.1|DT009871
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864655|gb|DT013710.1|DT013710
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864820|gb|DT013875.1|DT013875
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71863759|gb|DT012814.1|DT012814
EST:     TCTCAACGTCGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: TCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATATACGAAAGCACCCGGTTCACTTGGCAGCAAACTTACGAGCGCTGCTGCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgttttttaaaggccacacatgtatctatttttatgatttaaggtagatacattttgtaggagggagaaagatgttacacataaatatttaaatctggttggtattctttcccctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC