Sequence
atgc intronic sequence ATGC exonic sequenceACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G36070.1 (Glycine max), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa-----
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ACGAAGCCGGGGACGACGAAGACCAGTGTTGAGGGAGTGTTTGCTGCTGGGGATGTTCAGGACAAGAAGTATAGGCAAGCTATTACTGCTGCTGGCACTGgtaagttacagatttgtctatgatgcatagagctgcttattggacattggtgtatg-tacatgtgtgt----gtataagatccctggttttgaagcatagtagtg
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G09350.1 (Glycine max), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgtt---catttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa
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ACGAAGCCGGGGACGACGAAGACCAGTGTGGAGGGAGTGTTTGCTGCTGGGGATGTTCAGGACAAGAAGTATAGGCAAGCTATTACTGCTGCTGGCACTGgtacgttgtagatttatctaagatgcgtagagtttttattggacattgctgtatgtgtgtatatgatccctggttttgaagcgtagttatgttttgtcca---
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G21630.1 (Glycine max), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttc-tactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa----
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ACCAAACCTGGCACCACAAAGACTAGTGTTGATGGAGTTTTTGCTGCTGGTGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttgtttcataatctttgtattcaaat---aaattagattgttgtgttgtgatagttgtggattc--atgttatttgattattcctggttttgaatttt
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G17420.1 (Arabidopsis thaliana), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattt--tcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa-----
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ACCAAGCCAGGTACTACTAAGACGAGCGTGGTTGGTGTATTTGCTGCTGGAGATGTTCAAGACAAGAAGTATAGACAGGCCATCACTGCTGCAGGAACTGgtt---tgtactctaacttgtattttttacatttc-tgcacaacgagttagctctttgaaatca--tgattggaatctatcatgagtatc-taagggtgcttgttga
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ27411 (Selaginella moellendorffii), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa
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ACTACTCCAGGAACCACAAAGACCAACATTCCTGGTGTGTTCGCTGCTGGGGACGTCCAAGACAAGAAGTATAGGCAAGCGGTGACTGCTGCCGGTACCGgtaagttttataat--ctctttcttttgtgatcactgctaaactttttgattcacag-------------------------------------------
upper sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ33096 (Selaginella moellendorffii), 5'ss of exon 1
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa
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ACTACTCCAGGAACCACAAAGACCAACATTCCTGGTGTGTTCGCTGCTGGGGACGTCCAAGACAAGAAGTATAGGCAAGCGGTGACTGCTGCCGGTACCGgtaagttttataat--ctctttcttttgtgatcactgctaaacttttcgattcacag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110390972|gb|EC955922.1|EC955922EST: AGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTG GGTGCATGGCAGCATTAGATGCAGAGCATTACCTGCAAGAGATTGGATCCC
genomic: AGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctaca ... catgatacagGGTGCATGGCAGCATTAGATGCAGAGCATTACCTGCAAGAGATTGGATCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttctactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca