Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtttttatttttattttgactcctatacaattataaacaatacttatactgaggtcggatcatgaatag

Basic information

species Vitis vinifera
transcript Vv04s0044g01410.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G39370.3 (Glycine max), 5'ss of exon 1
TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtttttatttttatttt---gactcctatacaattataaacaatacttatactgaggtcggatcatgaatag-----
|||   |||||| || |||||||||||| |||| ||| ||   |||||||||||||||||| ||||||| || ||||| || | |||||| || |||||||| |  || |    |||| | || || || ||| |  |  | |    | |    | |    ||||   |  |||| |   |   ||  |  |    ||     
TGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaac--cccttttcttaattttgttactcatgatcttagaatttgagttcggacataactcaatcttacaa-aaacccgatttttttgaagtgaga

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G15540.1 (Glycine max), 5'ss of exon 1
TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtt----tttatttttattttgactcctatacaattataaacaatacttatactgaggtcggatca--tgaatag-
|||   |||||| || |||||||||| | |||| ||  ||   |||||||||||||||||| ||||||| || ||||| || | |||||| || |||||||| |  || |    |||||| || || ||    ||  ||| |  |   ||  |   |     ||   | |     || |  | |     |||    | ||  
TGTTCTCTTGGCAGCTACCCTTTTCATCTCTGCAGCCTCCAATTCTTCTGCCAATGCTGGGATCATTGATGATTACCTTGAGAGGAGCAAGGCTAACAAGgtataatcaac--cccttctcttaattttgaggttgttttctggtgcaaccgcccgaggcccatggccgaaggggatccaaaagaaaattcaaacaactata

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G64040.1 (Arabidopsis thaliana), 5'ss of exon 1
TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtttttatttttattttgactcctatacaattataaacaatacttatactgaggtcggatcatgaatag
 || | ||| || || || || ||| ||||||||||||  ||  ||||||| |||||||| ||||||||||| ||||| || | ||||||| | ||||| ||  ||    | || | ||         | ||    ||  |     ||||| | | || |  |      || |    |  |  ||| ||      
GGTTTTCTTAGCAGCTACACTCTTCTCCACTGCTGCTGTTTCTGCTTCTGCTAATGCTGGCGTCATTGACGAATACCTCGAGAGGAGCAAAACCAACAAAgtaagtctttgaatgcctc-------aatcttgacattgctaaagatcctaaaaagttttgga------ttttttgaaattttgattatag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110425478|gb|EC991863.1|EC991863
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|51990033|gb|CV179488.1|CV179488
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71868320|gb|DT017375.1|DT017375
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|51050288|gb|CO818473.1|CO818473
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71876102|gb|DT025157.1|DT025157
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110423571|gb|EC989918.1|EC989918
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|34415917|gb|CF414671.1|CF414671
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110390553|gb|EC955470.1|EC955470
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110423324|gb|EC989667.1|EC989667
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71867548|gb|DT016603.1|DT016603
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110690623|gb|EE067883.1|EE067883
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110732878|gb|EE108551.1|EE108551
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71890517|gb|DT039572.1|DT039572
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|32269256|gb|CD718415.1|CD718415
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|77582659|gb|DV220317.1|DV220317
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71873213|gb|DT022268.1|DT022268
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110383651|gb|EC948034.1|EC948034
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110684898|gb|EE062701.1|EE062701
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110395827|gb|EC961500.1|EC961500
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|77584625|gb|DV221396.1|DV221396
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110689671|gb|EE066098.1|EE066098
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110404140|gb|EC970159.1|EC970159
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110375764|gb|EC940779.1|EC940779
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110383661|gb|EC948044.1|EC948044
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71875760|gb|DT024815.1|DT024815
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|34416201|gb|CF414955.1|CF414955
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110694019|gb|EE070760.1|EE070760
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110378137|gb|EC943256.1|EC943256
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110701910|gb|EE080018.1|EE080018
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71876090|gb|DT025145.1|DT025145
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|34320189|gb|CF372943.1|CF372943
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71866464|gb|DT015519.1|DT015519
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|46917592|gb|CN546921.1|CN546921
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110690643|gb|EE067984.1|EE067984
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110687379|gb|EE064736.1|EE064736
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110395900|gb|EC961574.1|EC961574
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110390909|gb|EC955852.1|EC955852
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71872385|gb|DT021440.1|DT021440
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71870597|gb|DT019652.1|DT019652
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110688158|gb|EE066390.1|EE066390
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110729584|gb|EE105684.1|EE105684
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110384002|gb|EC948413.1|EC948413
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110694411|gb|EE071495.1|EE071495
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110375702|gb|EC940713.1|EC940713
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|71867631|gb|DT016686.1|DT016686
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110389918|gb|EC954792.1|EC954792
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110692541|gb|EE071907.1|EE071907
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110369476|gb|EC933636.1|EC933636
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|77582629|gb|DV220302.1|DV220302
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110692402|gb|EE071608.1|EE071608
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110377094|gb|EC942155.1|EC942155
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|77585512|gb|DV221841.1|DV221841
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110421368|gb|EC987664.1|EC987664
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
EST: gi|110361624|gb|EC925110.1|EC925110
EST:     CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAG                         GAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA
genomic: CCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttcca ... tcatgaatagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtttttatttttattttgactcctatacaattataaacaatacttatactgaggtcggatcatgaatag

- - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG