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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGGGATCTGGGTCGGGGTCGGTTTCGAGTGTTAGCTCTTCTGGGTCGTCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttctggggttttggtttgaattttttaaaattaggtcttgggttgttgttttgttgttgattttatcttgggctttggatgatcgattgattga...

Basic information

species Vitis vinifera
transcript Vv04s0044g01290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829011|gb|FQ419543.1|FQ419543
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         -GG---GG---AAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|161718297|gb|FC064758.1|FC064758
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|352768043|gb|FQ467442.1|FQ467442
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|349830073|gb|FQ420333.1|FQ420333
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         -GG---GG---AAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|161714297|gb|FC063543.1|FC063543
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|352782317|gb|FQ470219.1|FQ470219
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|161721327|gb|FC069717.1|FC069717
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
EST: gi|352769771|gb|FQ468699.1|FQ468699
EST:     TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAG                         AGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG
genomic: TCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttct ... ttgatcccagAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTGGGATCTGGGTCGGGGTCGGTTTCGAGTGTTAGCTCTTCTGGGTCGTCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGgtgggtttctggggttttggtttgaattttttaaaattaggtcttgggttgttgttttgttgttgattttatcttgggctttggatgatcgattgattga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta