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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATCAGACCAGGGGATTCTCTCTTTCCAAATCTCTCATCGCCATGACGAAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattcaattataagttttccaaatcttgggtcttaccagccgtacggactgaatgtagtgtttttaaaattttcttccttattttatgccttcag

Basic information

species Vitis vinifera
transcript Vv04s0044g00980.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00980.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G09770.1 (Arabidopsis thaliana), 5'ss of exon 1
CACATCAGACCAGGGGATTCTCTCTTTCCAAATCTCTCATCGCC---------ATGACGAAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattcaattataagttttccaaatcttgggtcttaccagccgtacggactgaa--tgtagtgtttttaaaattttcttccttattttatgccttcag
            ||   |||||||| | || |  || | || ||         |||||||||||||| ||||||||||||||  | || ||  | ||||||||||| ||||||    ||      |  |||||    |  |  |||| ||   |  |   ||  |||   ||    ||||| || | ||  |  | | |            
----------AGGGTTCTTCTCTCTGTTCAGAGATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACCGTATGTCCATGCTTAGgtttagtctc-----cagcttttctttttgctacgtctcactttctttttagatagaaatcgtttgatttttgaagtgttggta-tcactcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709263|gb|EE084569.1|EE084569
EST:     AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAG                         AACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
genomic: AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattc ... atgccttcagAACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
EST: gi|110702795|gb|EE079078.1|EE079078
EST:     AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAG                         AACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
genomic: AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattc ... atgccttcagAACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
EST: gi|351016180|gb|FQ435500.1|FQ435500
EST:     AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAG                         AACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
genomic: AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattc ... atgccttcagAACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
EST: gi|110710349|gb|EE086607.1|EE086607
EST:     AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAG                         AACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC
genomic: AAGTTCAGAAAGCTTGGTCGGCCCACTGGCCATAGAATGTCCATGCTCAGgtttcaattc ... atgccttcagAACAATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACCGTTGC