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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaactttacaattttgtgttacagaattatctttgtatttaaaccttttttttgggtccatgttgaatctaatgctaaacttacttttggttgcag

Basic information

species Vitis vinifera
transcript Vv04s0044g00880.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G15600.1 (Glycine max), 5'ss of exon 1
TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaactttacaattt-tgtgttacagaattat-ctttgtatttaaaccttttt--tttgggtccatgttgaatctaatgctaa-acttacttttggttgcag
| |  | ||  |||  |||||||| |||||||| || ||||||||||| |||  ||| ||| ||||||||||||||||| |||||||||| || ||  ||||||||| | | ||| ||| |||   |     | |    |  ||| || |  | | || ||    ||||  ||    |     ||     | | ||| | |   |  | | |||||||
TTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATgtgagtttaactagcagaagcttgttatcccctctcccccctaatcatgcaatatgttcaatttgttttgcttgcaattttaattttccttgaagctgataaaaaaatattgttgcag

upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G32330.1 (Glycine max), 5'ss of exon 3
TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaact-ttaca----attttgtgttacagaattatctttgtatttaaaccttttttttgggtccatgttgaatctaatgctaaacttacttttggttgcag
| |  | ||  |||   ||||||| |||||||| || ||||||||||| |||  ||| ||| ||| ||||||||||||| |||||||||| || ||  ||||||||| | | ||| ||| || ||||      |    |  | ||  ||  ||  | | ||          ||||  ||     ||||| || ||   |||     || | |||||||
TTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATgtgagtttaactagcagaagctgttaccccccctccaatcatgcaatatcttcaatttgttctgcttgcaattttaagttttccttgaagctgataaaaaa-----ttcttgttgcag

upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G15640.1 (Glycine max), 5'ss of exon 2
TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaactttacaattttgtgttacagaattatctttgtatttaaaccttttttttg-ggtccatgttgaatctaatgctaaacttacttttggttgcag
 ||| | ||   |||||||||  | |||||||| || ||  |||| || ||   ||| ||||||||||||||||||||| ||||||||||||| ||  ||||||||| | |   | ||| |||   | || ||     |     |    |  | | |     || | ||||       |||| ||||| ||    || |  | | | |  |   
CGTTCTTCCCAGTAAGATTTTCAAAATTGAGGAATCACCGTTGCATGAATTTTCTGGTCATGCCAGTGATGTCTTGGATTTGGCTTGGTCCAATTCAGATgtgagtttaactttcagaagcttgttatttctgcacccctcttgtgctatgatttatgtttgttctgtttgcaaattctgttaaatctgatctcgaatt--cctcttgcag---

upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G39290.1 (Glycine max), 5'ss of exon 2
TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaactttacaattttgtgttacagaattatctttgtatttaaaccttttttttgggtccatgttgaatctaatgctaaacttacttttggttgcag
 ||| | ||  ||||||||||  | || ||||| || ||  |||| || ||  |||| ||||| ||||||||||||||| ||||||||||||  ||  ||||||||| | |   | ||| |||   | |||||    ||  | ||||  |   |||||    ||| || ||  | ||  ||   |  |||   |     | ||    ||||||
CGTTCTTCCAAATAAGATTTTCAAAATCGAGGAATCACCGTTGCATGAATTTTATGGTCATGCAAGTGATGTCTTGGATTTGGCTTGGTCCAGTTCAGATgtgagtttaactttcagaagcttgttatttttgc---acccacttatactataatttatg--tttgttctgtttgcaaattctgttaaatctgatctcgagttcctcttgcag