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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAGCACCCCAAGCCCATCGTCTTCGGAGATTGGCTTGGATCTCTGTTCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgcttttcgatttcaaccgatctgatttctatttttttcgctgaagtcattgattttgttcccttgatgcgattttacttgattttagatttgattt...

Basic information

species Vitis vinifera
transcript Vv04s0044g00580.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715437|gb|FC069037.1|FC069037
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|294965393|gb|GW837108.1|GW837108
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110703663|gb|EE080716.1|EE080716
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37185758|gb|CF605111.1|CF605111
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161715877|gb|FC067456.1|FC067456
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|30297466|gb|CB974260.1|CB974260
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161718707|gb|FC066630.1|FC066630
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|351033564|gb|FQ447723.1|FQ447723
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110732373|gb|EE107605.1|EE107605
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161720901|gb|FC070998.1|FC070998
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161718238|gb|FC066957.1|FC066957
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|351014693|gb|FQ437893.1|FQ437893
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110721058|gb|EE097624.1|EE097624
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|349829797|gb|FQ422110.1|FQ422110
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110724889|gb|EE101112.1|EE101112
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110687074|gb|EE064164.1|EE064164
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161714150|gb|FC064415.1|FC064415
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110366393|gb|EC930285.1|EC930285
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161716586|gb|FC067172.1|FC067172
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110721193|gb|EE097911.1|EE097911
EST:     TCCTCCTTCGCCT-CGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110709158|gb|EE084373.1|EE084373
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37184885|gb|CF604238.1|CF604238
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|27578609|gb|CB001304.1|CB001304
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161708078|gb|FC056482.1|FC056482
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161718593|gb|FC067914.1|FC067914
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110693092|gb|EE069021.1|EE069021
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110698021|gb|EE075559.1|EE075559
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110708736|gb|EE086617.1|EE086617
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110700776|gb|EE077727.1|EE077727
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|27579389|gb|CB002084.1|CB002084
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161718489|gb|FC067310.1|FC067310
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161719886|gb|FC069015.1|FC069015
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161712262|gb|FC061885.1|FC061885
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37184908|gb|CF604261.1|CF604261
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|351014010|gb|FQ434162.1|FQ434162
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37184922|gb|CF604275.1|CF604275
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110722642|gb|EE099048.1|EE099048
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161720100|gb|FC065464.1|FC065464
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37184175|gb|CF603529.1|CF603529
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37188829|gb|CF608178.1|CF608178
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110690418|gb|EE067510.1|EE067510
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110393093|gb|EC958006.1|EC958006
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161715776|gb|FC066180.1|FC066180
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161717624|gb|FC066903.1|FC066903
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161707977|gb|FC057784.1|FC057784
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110701484|gb|EE079104.1|EE079104
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110699170|gb|EE075932.1|EE075932
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110703875|gb|EE081193.1|EE081193
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|351024912|gb|FQ433329.1|FQ433329
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110698024|gb|EE075562.1|EE075562
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161720220|gb|FC070872.1|FC070872
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161715182|gb|FC065792.1|FC065792
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|351025029|gb|FQ433446.1|FQ433446
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|110699598|gb|EE076737.1|EE076737
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|37185169|gb|CF604522.1|CF604522
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161714410|gb|FC064421.1|FC064421
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: gi|161707105|gb|FC057295.1|FC057295
EST:     TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT---                         A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG