Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCTCATCGTCTTTGCTCCGAGgttggctgcggttctcgtctctgaaattctttcatttttcttctttcttcttgcttataaaattcttttgttttcctc

Basic information

species Vitis vinifera
transcript Vv04s0043g00440.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77581200|gb|DV219528.1|DV219528
EST:     CTCTTCTCATCGTCTTTGCTCC--G                         AGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
genomic: CTCTTCTCATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: gi|71890464|gb|DT039519.1|DT039519
EST:     CGTCTTTGCTCC--G                         AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAG
genomic: CGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: gi|351017700|gb|FQ436053.1|FQ436053
EST:     ATCGTCTTTGCTCC--G                         AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAG
genomic: ATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: gi|71873340|gb|DT022395.1|DT022395
EST:     CGTCTTTGCTCC--G                         AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAG
genomic: CGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: gi|77581790|gb|DV219850.1|DV219850
EST:     TCTCATCGTCTTTGCTCC--G                         AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAG
genomic: TCTCATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT