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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCTATTCGGGTGTCAAGAACTCGATCAGAGTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGgtaagcttccgttctgggtaatcttgaaatttgccaacaaaccgaggtttcttcttttgcgtgattgatctctgtttgatgggtttgattatgacttttgttgcatcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03740.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 1
AAAGCCTATTCGGGTG---TCAAGAACTCGATCAGAGTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGgtaagcttccgttctgggtaatcttgaaatttgccaacaaaccgaggtttcttcttttgcgtgattgatctctgtttgatgggtttgattatgac----ttttgttgca--tcag-------------------------------------------------------------------------------------
   |||| || ||||     ||||||| || || |||||||| || ||  | ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||  || | || ||    || ||   ||||  |||| ||      ||    |     | |  |  ||  |      |       | || |  |    |||| |||||  | ||                                                                                     
---GCCTCTTGGGGTCGTTCCAAGAACGCGTTCTGAGTCCTTCCACGTGGCTCACAAGGTCCCAGTTGGTGACACTCCTTATGTCAGAGCCAAAAACGTTCAGgtaaatttgccttttgatggattttttcattttgcaactaattttttttagagcaaaaaccttgtaaattgcaaaaaaagaaacaaggtttttgcctcttttttttgcaatttagaaggttttttcccttttcaagtttttttcatgtttcaaatgttgagtgttgttctttcgttttgtttttgtgtgtgtgtgttcag

upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G23380.1 (Glycine max), 5'ss of exon 1
AAAGCCTATTCGGGTG---TCAAGAACTCGATCAGAGTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGgtaagct---tccgttctgggtaatcttgaaatttgc---------------caacaaac--cgaggtttcttcttttgcgtgattgatctctgtttgatgggtttgattatga-cttttgttgcatcag---------
   |||| || || ||    | ||||| || || ||| |||| || ||  | ||||| |||||  | || |||||||||||||||||||| ||||| ||||||||||  |   | | | ||||||  | ||    |||                 |||||| |  |||||||  | |  ||  | |  |  ||  ||||| | | |||   |  ||  | || ||||  |  |         
---GCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcag