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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt...

Basic information

species Vitis vinifera
transcript Vv04s0023g03690.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| |||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| ||||| || |||||||     |  ||||     |    |    |||      |||         | | |  |          |   |                           
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaa--tccttcaacccgccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccag---------------------------

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g36710.1 (Oryza sativa), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| |||||||| || ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||| |||| ||||| || |||||||  || |       |    |  | | |   | |     |   |  | ||  ||    |  ||| |||    | || |||    | | ||          
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCTCCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtacccatcacctcctcgcgacctctctccccatacacccccat--agatctcatctcgccggtgggg----gattcgat----tcgcag----------

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G042604_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgt--ctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| |||||||| || |||||||||||||| |||||||||||||| |||||| |||| |||||||||||||| ||||||||  |||| ||||| || |||||||  |       | | |   || ||| |||  ||        |   |  |    |      ||        |  |    ||  ||||  |   |        
AGGCCGTCCGCAAGGGCAACGCCGCCGTGGGCGTCCGCGGCACGGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACACCCAAGCTCCAGGACTCCAGgtagcaaacccctccgtccctcctttctatcctccgaccagatctcgcgatcctcgcctcaaactactatctctgacccga--gtttccgtctccctag---

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G050467_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| |||||||| || ||||||||||| ||||||||||||||   ||||||| |||| |||||||||||||| ||||||||| |||| ||||| || ||||||||      |       | |   |   |    |        | | |  |  ||     |  |        |     |           | |  |||    
AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgtcggtacctccccctccctcccatccaccagatctcttgaccccggg-cgccgcctcacccaaatcctccc---ccaaaaaatctccgcag

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G138128_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcct-tttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| |||||||| || ||||||||||||||||||||||||||||| |||||| |||| ||||| || ||||| ||||| ||| |||| ||||| || |||||||  |      | | |   ||   |  ||  ||        |   |  | | || |    ||   |    |  |       |  ||         |||   
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaaccctccgtccctcccatcgatcctccgaccagatctcgcgattcccgactcaaactaatatctctgaccc--cgaattcatgtctccccag--

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G05190.1 (Glycine max), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgt----ctccttttttca-tttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
|||||||||| || |||||||||||||||||||||||||||||||||| | |||| |||||||||||||| || ||||||||||| |||||||| |||||||    || || || ||| ||   |  |||  ||| | || ||   | | | |||    |||||   ||   |||||     || | ||||        ||    
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAACGTCGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAGCTCCAAGACTCCAGgtaccactactcttatcaattcccccctttcctttcccttattaggttttttaatcggcaaatgttagttttgttagcaga-gaggattttccctcttccc----

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G23580.1 (Glycine max), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgt----ctccttttttcatttt--tcatttttattttc--tttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
|||||||||| || ||||||||||||||||||||||||||||||||||   | || |||||||||||||| || |||||||||||||||||||| |||||||    || || |||||| ||   |    |   |||    |   ||||   |   | ||| |      |   | |   |     || |   |  |||||         
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAATGTTGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAACTCCAAGACTCCAGgtactactactcttttcaattcaattccctccgtttcagatccctttccccttcgattactagggattaaccaagaaaactacgtgtta--taaggagaagg------

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G66140.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt-
|||||||||| || || |||||||||||||| |||||||| ||||||||| | || |||| ||||||||| ||||||||| |||| || || ||||| |||| |  |||      | |||| ||||||  |         |     |  | ||      |      || |   | ||| |    |   ||       |   
AAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCGACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGgttttatttccat-ctcttcacttttatcatggcaccaattaacagacttgccctctctacttattggatcctgcttggtttactctcagttgctagttga

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G51260.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttcttt--ttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
|||||||||| || || |||||||||||||| ||||||||||| || ||  |||| |||| |||||| || || |||||| | || ||||| |||||||||| |   |      | |  |  |   |  | |||        ||  ||  ||       ||    |    || |  |||| |  |||  |   || |    |
AAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGgtattgctccgatctctaccgatacaagatgcttaaaccggatttagtccatttacttttgtttctgcactttgattttggt--tttaagcttcacctggat

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ31080 (Selaginella moellendorffii), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| ||||| || || ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||| ||||| ||  | ||||    ||   ||   | ||        |   ||| |  ||  ||   || || ||||    ||   |                                
AGGCCGTGCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACAATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccctctgatctctagacctctagatttctagctcctg---attccgaaatctctgtccag--------------------------------

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ34636 (Selaginella moellendorffii), 5'ss of exon 1
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt
| ||||| || || ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||| ||||| ||  | ||||    ||   ||   | ||        |   ||| |  ||  ||   || || ||||    ||   |                                
AGGCCGTGCGAAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACGATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccctctgatctctagacctctagatttctagctcctg---attccgaaatctctgtccag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713978|gb|EE090372.1|EE090372
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110373492|gb|EC937734.1|EC937734
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110727857|gb|EE105096.1|EE105096
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110388333|gb|EC953069.1|EC953069
EST:     CAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: CAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110686030|gb|EE063266.1|EE063266
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|71890512|gb|DT039567.1|DT039567
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110724303|gb|EE100015.1|EE100015
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110709943|gb|EE085844.1|EE085844
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110732837|gb|EE108475.1|EE108475
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|22007960|gb|BQ792994.1|BQ792994
EST:     CAAACTCCAAGATTCCAG                         ACCAGTTAGGAAGATTGTT-ACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: CAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|34545425|gb|CF513657.1|CF513657
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCGAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110708913|gb|EE083912.1|EE083912
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|71868881|gb|DT017936.1|DT017936
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110388909|gb|EC953710.1|EC953710
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110368556|gb|EC932538.1|EC932538
EST:     CCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: CCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|34545512|gb|CF513744.1|CF513744
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCGAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110689049|gb|EE064931.1|EE064931
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACTTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110360939|gb|EC924384.1|EC924384
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|33406060|gb|CF211687.1|CF211687
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110403011|gb|EC964033.1|EC964033
EST:     ACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTT-ACCTGGGATGATCACA-TGCCACTGGCCTGT
genomic: ACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCT-GGATGATCACATTG-CACTGGCCTGT
EST: gi|28959445|gb|CB339723.1|CB339723
EST:     ATCGTTCTCGGCGTCGAGAAAACGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110381428|gb|EC934430.1|EC934430
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|26261423|gb|CA812486.1|CA812486
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110387559|gb|EC952239.1|EC952239
EST:     CAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: CAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
EST: gi|110390897|gb|EC955840.1|EC955840
EST:     ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAG                         AACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC
genomic: ATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctcctttt ... tgttctgcagAACAGTTAGGAAGATTGTTAACCTGGATGATCACATTGCACTGGCCTGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatga