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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCAAGTTGTTGGGCCACGGCCAATTTGGGTATACGTATGTCGCCACCGATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAGgtctggtttggttcctttttcttcttcatcttcttcatccaattgggttttgtatttttcggttgacttcgttggagattttgtgaactttatagcctga...

Basic information

species Vitis vinifera
transcript Vv04s0023g03420.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864824|gb|DT013879.1|DT013879
EST:     ATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAG                         ATGATTCTTCCTATTGCTGTTGAAGACGTTAAGCGAGAGGTCAAAATATTA
genomic: ATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAGgtctggtttg ... ttgatggcagATGATTCTTCCTATTGCTGTTGAAGACGTTAAGCGAGAGGTCAAAATATTA
EST: gi|161721254|gb|FC069680.1|FC069680
EST:     ATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAG                         ATGATTCTTCCTATTGCTGTTGAAGACGTTAAGCGAGAGGTCAAAATATTA
genomic: ATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAGgtctggtttg ... ttgatggcagATGATTCTTCCTATTGCTGTTGAAGACGTTAAGCGAGAGGTCAAAATATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCAAGTTGTTGGGCCACGGCCAATTTGGGTATACGTATGTCGCCACCGATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAGgtctggtttggttcctttttcttcttcatcttcttcatccaattgggttttgtatttttcggttgacttcgttggagattttgtgaactttatagcctga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA