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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTGGATGGAGTTGTACGGACCACCGCGGGTTACGCCGGTGGATCCAAGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttctcctccttttattctctggttcattattttgagtttgtctttctcttaatctggaacccggttttgttgctgcgaaaatgtaggaaaaaga...

Basic information

species Vitis vinifera
transcript Vv04s0023g03200.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77582988|gb|DV220511.1|DV220511
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|110719878|gb|EE095384.1|EE095384
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|33404892|gb|CF210519.1|CF210519
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|33404977|gb|CF210604.1|CF210604
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|71875950|gb|DT025005.1|DT025005
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|71875949|gb|DT025004.1|DT025004
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|110719966|gb|EE095534.1|EE095534
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|161719951|gb|FC069029.1|FC069029
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|110716777|gb|EE092054.1|EE092054
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|71870654|gb|DT019709.1|DT019709
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|294966392|gb|GW839499.1|GW839499
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|161716432|gb|FC068424.1|FC068424
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|71855181|gb|DT004236.1|DT004236
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|33408384|gb|CF214011.1|CF214011
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|110718218|gb|EE094803.1|EE094803
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|161716720|gb|FC067841.1|FC067841
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|71855211|gb|DT004266.1|DT004266
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
EST: gi|30133186|gb|CB918525.1|CB918525
EST:     AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAG                         ATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC
genomic: AGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttct ... tgttatgtagATTGAATACAATCCCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCTTGGATGGAGTTGTACGGACCACCGCGGGTTACGCCGGTGGATCCAAGGCCAACCCCGAGTACAGAAGCTGGGGCGATCATGCCGAGTCAGTTCAGgttcagttctcctccttttattctctggttcattattttgagtttgtctttctcttaatctggaacccggttttgttgctgcgaaaatgtaggaaaaaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa