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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTGCAGATCGGTGTGGAATTCTGTACGATTCTATGAAGACGTTCTGGGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcctcttattcctttcttttaacggcatactttcactaaatttctatcccaacttgagtatttaattcctctgtttgtatgaag

Basic information

species Vitis vinifera
transcript Vv04s0023g03040.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720994|gb|FC070361.1|FC070361
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|30300641|gb|CB977435.1|CB977435
EST:     GATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCTA-TGGAGCTTG                         GATGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTC-ACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|77587531|gb|DV222931.1|DV222931
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|349824516|gb|FQ413183.1|FQ413183
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|32247559|gb|CD713378.1|CD713378
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110689897|gb|EE066521.1|EE066521
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|30251894|gb|CB969627.1|CB969627
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110693894|gb|EE070523.1|EE070523
EST:     GGA-TTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|351054863|gb|FQ462893.1|FQ462893
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|351024125|gb|FQ423548.1|FQ423548
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110732323|gb|EE107507.1|EE107507
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110397382|gb|EC963117.1|EC963117
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110700259|gb|EE078095.1|EE078095
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|30255833|gb|CB971965.1|CB971965
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|32269228|gb|CD718387.1|CD718387
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|77586048|gb|DV222123.1|DV222123
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|161720466|gb|FC070578.1|FC070578
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGTCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|349824424|gb|FQ417811.1|FQ417811
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|71876055|gb|DT025110.1|DT025110
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|30251887|gb|CB969620.1|CB969620
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|349811351|gb|FQ407577.1|FQ407577
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|161706558|gb|FC055847.1|FC055847
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCAATGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
EST: gi|110731806|gb|EE106541.1|EE106541
EST:     GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTG                         GTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA
genomic: GGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcc ... ttgtatgaagGTTGTTCAATTATGGCATTGGGATACACCTGCTGGAGAACCCGGCAATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGTGCAGATCGGTGTGGAATTCTGTACGATTCTATGAAGACGTTCTGGGATTTTGTCTCATCAAACGCCCCACTTCTTTTGATTTCACTGGAGCTTGgttagcgtcctcttattcctttcttttaacggcatactttcactaaatttctatcccaacttgagtatttaattcctctgtttgtatgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT