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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCATGGCCTCACTGTGGCAAGAACCTGGGCTTTCAGTGATGGTGGGTACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactctctttcatactcatcctttttattatcatctctccttctgattctcaagtctccatgttgtcgattttatttttgttctcgcttttgaag

Basic information

species Vitis vinifera
transcript Vv04s0023g02130.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02130.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G37720.2 (Glycine max), 5'ss of exon 1
AAGCCATGGCCTCACTGTGGCAAGAACCTGGGCTTTCAGTGATGGTGGGTACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactctctttcatactcatccttttta----ttatcatctctccttctgattctcaagtctccatgtt-gtcgattttatttttgttctcgcttttgaag-------------
||| |||||||| ||||| || ||||| ||||| |||||||||||||| || || || || || || || |||||||| || ||| | |||||||||| |||   ||    ||| ||  | ||  |||||     || | |  | || || |  |  |  |      ||||| ||   |||||||||   | | |  | ||                
AAGTCATGGCCTTACTGTTGCTAGAACTTGGGCCTTCAGTGATGGTGGCTATAGACCACTACAATATTCCCCTGGCTTCTATAATGAACAAATGTTCACGgtaagacctagtttgatttttattttttttttaccttttaacatgtcattttcttgttggacgtgttatgtttgtattttttattttgaatgttgtctgtgtgttgttggaatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405953|gb|CF211580.1|CF211580
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
EST: gi|294965192|gb|GW837023.1|GW837023
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
EST: gi|110712433|gb|EE090050.1|EE090050
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
EST: gi|110712531|gb|EE090260.1|EE090260
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
EST: gi|110712345|gb|EE089858.1|EE089858
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
EST: gi|110730901|gb|EE108513.1|EE108513
EST:     ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAG                         GGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA
genomic: ACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGgtctaactct ... gcttttgaagGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATA