1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatcctttttttgttaatcttttttgtctttttgtttctttggtttctagtttccttgtatactaattattgccttttatgaatgtcttattcttctctttataattctaaatag
species | Vitis vinifera |
transcript | Vv04s0023g01950.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAG CCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCEST: gi|110369611|gb|EC933775.1|EC933775
genomic: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatccttt ... ttctaaatagCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCC
EST: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAG CCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCEST: gi|110718379|gb|EE095148.1|EE095148
genomic: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatccttt ... ttctaaatagCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCC
EST: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAG CCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCEST: gi|33403597|gb|CF209224.1|CF209224
genomic: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatccttt ... ttctaaatagCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCC
EST: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAG CCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGGGCC
genomic: AAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatccttt ... ttctaaatagCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGgtaatcctttttttgttaatcttttttgtctttttgtttctttggtttctagtttccttgtatactaattattgccttttatgaatgtcttattcttctctttataattctaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC