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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTGAGATGGCCAAGAAGGCTGCTTGGAGCGTTAGTTCTTGCAAGGCTGGCAATGGCGTCCTTCTTCTTCGCGACGACAACCTCGATACCTATTGGCAgtactcttccttcccctctctctaaaacctctctttctctctttaaaccctaacttccctgcttgatttggtttcag

Basic information

species Vitis vinifera
transcript Vv04s0023g01940.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G18290.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCGTGAGATGGCCAAGAAGGCTGCTTGGAGCGTTAGTTCTTGCAAGGCTGGCAATGGCGTCCTTCTTCTTCGCGACGACAACCTCGATACCTATTGGCAgt------------actcttccttcccctctctctaaaacctc--tctttctctctttaaaccctaacttccctgcttgatttggtttcag---------
|  | |||||||  || || || |||||||||||||| ||||| ||| | ||||||||||||     ||| ||||||||||| ||||| || ||||||||||            |      ||    ||||        ||||  ||||| ||||| |  |    ||     |  |||  ||| ||||| |         
TAAGAGAGATGGGTAAAAACGCAGCTTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCTCGAGACTTATTGGCAgttgagaaaacgaaaaaaaaactaaagctcttatctttccctcattctttgtctctattcaattaaaggattcgacttttttttgtttctgaaattgtag