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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATGGGATCCTCCGCGCAGATCATCCGCGACAACTCCGTCTCCGTCCTCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcaccgttttttccacctctgtgatgttgatttcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01860.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G25310.1 (Glycine max), 5'ss of exon 1
CATTATGGGATCCTCCGCGCAGATCATCCGCGACAACTCCGTCTCCGTCCTCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgca---ccgttttttccacctctgtgatgttgatt--tcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacag--
||| |||||||||||| | ||| | |||||||||  | |||| ||||||||| | |||||||||||||| ||  ||||||||||||| ||||||||||| ||||  | |           | ||| |  | ||     ||    | ||  ||||     ||| |    |||    || ||||| ||   | |        
CATCATGGGATCCTCCACTCAGGTTATCCGCGACGGCGCCGTTTCCGTCCTCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaaacgaagaagatgcactttagagaataaaatgcaccaataatcattgaggttttatctgatttgtagaatttgttatgcatatacttgatt

upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G06280.1 (Glycine max), 5'ss of exon 1
CATTATGGGATCCTCCGCGCAGATCATCCGCGACAACTCCGTCTCCGTCCTCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac-cgttttttccacct-ctgtgatgttgatttcgattctc-atgagtttttgaatacattgactgagtttgtaatcgttgttgacag------
||| |||||||||||| | ||  |||||||||||  | |||||||||||||| | |||||||||||||| ||  |||||||||| || ||||||||||| |||     || |       | |  | |    ||  | |||  |||| |  ||  | | || |  |  ||   |  |  | || | | | ||  ||       
CATCATGGGATCCTCCACTCATGTCATCCGCGACGGCGCCGTCTCCGTCCTCTTCTGCGTCCTCATCGTCGCATTGGGTCCCATCCAATTCGGCTTCACGgtaccaaaacacacacaaacaagatgcaacaatagtcattgagattttttatctgatgtttagaa--ttagttatgcatatacttgattttatcacaatcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885483|gb|DT034538.1|DT034538
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|161706203|gb|FC054967.1|FC054967
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|71882686|gb|DT031741.1|DT031741
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|71885656|gb|DT034711.1|DT034711
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|71882039|gb|DT031094.1|DT031094
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|71882706|gb|DT031761.1|DT031761
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: gi|71889871|gb|DT038926.1|DT038926
EST:     TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC                         TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT