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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCACGCAGATCTCTACTCTTTCTCTCTCTCTCTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcctctcggtaatctctctcttggacaatctccttttcatcttcgaaatttcgaattaaaccatagtggtacgaccccttattgcaggggcata...

Basic information

species Vitis vinifera
transcript Vv04s0023g01820.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77585513|gb|DV221842.1|DV221842
EST:     TCTCTACTCTTTCTCTCTCG-GGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: TCTCT-CTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|27586914|gb|CB009609.1|CB009609
EST:     CTCTCGTGGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: CTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|110389868|gb|EC954740.1|EC954740
EST:     CTTTCTCTCTCGTGGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: CTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|71877049|gb|DT026104.1|DT026104
EST:     TCTCTACTCTTTCTCTCTCG-GGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: TCTCT-CTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|77588566|gb|DV223498.1|DV223498
EST:     CTTTCTCTCTCGTGGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: CTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|77582928|gb|DV220463.1|DV220463
EST:     TCTCTACTCTTTCTCTCTCG-GGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: TCTCT-CTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|110688789|gb|EE067741.1|EE067741
EST:     TCTCTACTCTTTCTCTCTCGTGGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: TCTCT-CTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|37189475|gb|CF608824.1|CF608824
EST:     CTCTCGTGGGCATATTCGGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: CTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
EST: gi|71875381|gb|DT024436.1|DT024436
EST:     CTTTCTCTCTCGTGGGCATATTCTGCAACGAAACAG                         TTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA
genomic: CTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcct ... tatctggcagTTGGAGTAATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCACGCAGATCTCTACTCTTTCTCTCTCTCTCTCTTTCTCTCTCGTGGGCATATTCGGCAACGAAACAGgtagtttcctctcggtaatctctctcttggacaatctccttttcatcttcgaaatttcgaattaaaccatagtggtacgaccccttattgcaggggcata

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