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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTAGCAAGAGGGGATAGCGAGGAAGACATGATACGGGCGGTGATAGTGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATGgtccctctctctcttcttttcgaatgaatttctcaatctaaggattctatctcatctatccttttcctaatcgtttttgagtttgattttgtgaggtcag

Basic information

species Vitis vinifera
transcript Vv04s0023g01770.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966870|gb|GW839745.1|GW839745
EST:     TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATG                         CCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG
genomic: TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATGgtccctctct ... gtgaggtcagCCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG
EST: gi|161719015|gb|FC067635.1|FC067635
EST:     TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATG                         CCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG
genomic: TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATGgtccctctct ... gtgaggtcagCCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG
EST: gi|161718282|gb|FC066033.1|FC066033
EST:     TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATG                         CCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG
genomic: TGATGAACACACAGGGCAAGCCCCGCCTCACCAAATTTTACGATTACATGgtccctctct ... gtgaggtcagCCTCCGGAGAAGCAGCAAGAACTCATTCGGCGCGTCTTTGGAG