Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTCACGGGCACCGTTACTCTCCGGTGGTCCGCCGGCAACCTCAACCATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttctttcgctttctttctgtttgtacacctgagttttggcattggatcttggtgcaaatgtgagggacagtgaggggttttgtgatcggtggatttttgtggaaacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01520.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385013|gb|EC949492.1|EC949492
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110687675|gb|EE065355.1|EE065355
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110384604|gb|EC949054.1|EC949054
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110383055|gb|EC947403.1|EC947403
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110731869|gb|EE106660.1|EE106660
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|71890516|gb|DT039571.1|DT039571
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110369800|gb|EC933969.1|EC933969
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110359986|gb|EC922427.1|EC922427
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST: gi|110708970|gb|EE084031.1|EE084031
EST:     ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG                         GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC